Compute number of intersect with an omop table.

Usage

addTableIntersectCount(
  x,
  tableName,
  indexDate = "cohort_start_date",
  censorDate = NULL,
  window = list(c(0, Inf)),
  targetStartDate = startDateColumn(tableName),
  targetEndDate = endDateColumn(tableName),
  nameStyle = "{table_name}_{window_name}",
  name = NULL
)

Arguments

x: Table with individuals in the cdm.
tableName: Name of the table to intersect with. Options: visit_occurrence, condition_occurrence, drug_exposure, procedure_occurrence, device_exposure, measurement, observation, drug_era, condition_era, specimen, episode.
indexDate: Variable in x that contains the date to compute the intersection.
censorDate: whether to censor overlap events at a specific date or a column date of x.
window: window to consider events in.
targetStartDate: Column name with start date for comparison.
targetEndDate: Column name with end date for comparison.
nameStyle: naming of the added column or columns, should include required parameters.
name: Name of the new table, if NULL a temporary table is returned.

Value

table with added columns with intersect information.

Examples

# \donttest{
cdm <- mockPatientProfiles()

cdm$cohort1 |>
  addTableIntersectCount(tableName = "visit_occurrence")
#> # Source:   table<og_134_1734615539> [?? x 5]
#> # Database: DuckDB v1.1.3 [unknown@Linux 6.8.0-1017-azure:R 4.4.2/:memory:]
#>    cohort_definition_id subject_id cohort_start_date cohort_end_date
#>                   <int>      <int> <date>            <date>         
#>  1                    3          7 1961-08-01        1968-12-17     
#>  2                    2          5 1908-12-14        1922-08-03     
#>  3                    3         10 1957-03-23        1965-09-11     
#>  4                    2          6 1968-01-30        1978-11-03     
#>  5                    3          9 1947-03-18        1948-08-07     
#>  6                    3          1 1970-07-16        1994-08-01     
#>  7                    2          4 1995-01-25        1995-10-10     
#>  8                    1          8 1970-06-17        1976-01-27     
#>  9                    1          2 1947-05-18        1954-05-28     
#> 10                    2          3 2009-11-01        2019-10-29     
#> # ℹ 1 more variable: visit_occurrence_0_to_inf <dbl>

mockDisconnect(cdm = cdm)
# }