Compute date of intersect with an omop table.

Usage

addTableIntersectDate(
  x,
  tableName,
  indexDate = "cohort_start_date",
  censorDate = NULL,
  window = list(c(0, Inf)),
  targetDate = startDateColumn(tableName),
  inObservation = TRUE,
  order = "first",
  nameStyle = "{table_name}_{window_name}",
  name = NULL
)

Arguments

x: Table with individuals in the cdm.
tableName: Name of the table to intersect with. Options: visit_occurrence, condition_occurrence, drug_exposure, procedure_occurrence, device_exposure, measurement, observation, drug_era, condition_era, specimen, episode.
indexDate: Variable in x that contains the date to compute the intersection.
censorDate: whether to censor overlap events at a specific date or a column date of x.
window: window to consider events in.
targetDate: Target date in tableName.
inObservation: If TRUE only records inside an observation period will be considered.
order: which record is considered in case of multiple records (only required for date and days options).
nameStyle: naming of the added column or columns, should include required parameters.
name: Name of the new table, if NULL a temporary table is returned.

Value

table with added columns with intersect information.

Examples

# \donttest{
cdm <- mockPatientProfiles()

cdm$cohort1 |>
  addTableIntersectDate(tableName = "visit_occurrence")
#> # Source:   table<og_130_1741347163> [?? x 5]
#> # Database: DuckDB v1.2.0 [unknown@Linux 6.8.0-1021-azure:R 4.4.3/:memory:]
#>    cohort_definition_id subject_id cohort_start_date cohort_end_date
#>                   <int>      <int> <date>            <date>         
#>  1                    2          9 1968-10-17        1982-02-13     
#>  2                    2          8 1910-03-08        1917-07-05     
#>  3                    3          2 1958-02-01        1983-09-17     
#>  4                    3          6 1979-08-27        1995-04-09     
#>  5                    1          5 1968-09-22        1974-01-27     
#>  6                    1         10 1928-07-23        1929-05-25     
#>  7                    1          7 1923-04-10        1930-01-12     
#>  8                    2          1 1987-07-30        2016-08-17     
#>  9                    3          4 2021-12-17        2022-09-06     
#> 10                    2          3 1966-09-10        1971-06-27     
#> # ℹ 1 more variable: visit_occurrence_0_to_inf <date>

mockDisconnect(cdm = cdm)
# }