Pushes test population into a blank CDM.

Usage

patientsCDM(
  pathJson = NULL,
  testName = NULL,
  cdmVersion = "5.3",
  cdmName = NULL
)

Arguments

pathJson: Directory where the sample populations in json are located. If NULL, gets the default inst/testCases directory.
testName: Name of the sample population JSON file. If NULL it will push the first sample population in the testCases directory.
cdmVersion: cdm version, default "5.3".
cdmName: Name of the cdm, default NULL.

Value

A CDM reference object with a sample population.

Examples

# \donttest{
filePath <- system.file("extdata", "testPatientsRSV.xlsx", package = "TestGenerator")
TestGenerator::readPatients(filePath = filePath, outputPath = tempdir())
#> ✔ All tables are valid
#> ✔ Unit Test Definition Created Successfully: 'test'
cdm <- TestGenerator::patientsCDM(pathJson = tempdir(), testName = "test")
#> 
#> Download completed!
#> Creating CDM database /tmp/RtmpiMJMiU/empty_cdm_5.3.zip
#> ■■■■■■■■■■■■■■■■■■■■              63% | ETA:  3s
#> ■■■■■■■■■■■■■■■■■■■■■■■■          76% | ETA:  3s
#> ■■■■■■■■■■■■■■■■■■■■■■■■■         80% | ETA:  4s
#> ■■■■■■■■■■■■■■■■■■■■■■■■■■■       85% | ETA:  3s
#> ! cdm name not specified and could not be inferred from the cdm source table
#> ✖ Standard table(s) in test data: person, observation_period, condition_occurrence, visit_occurrence, visit_detail and death
#> ✔ Patients pushed to blank CDM successfully
duckdb::duckdb_shutdown(duckdb::duckdb())
# }