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Retrieves the cdm reference into a local cdm.

Usage

# S3 method for class 'cdm_reference'
collect(x, ...)

Arguments

x

A cdm_reference object.

...

For compatibility only, not used.

Value

A local cdm_reference.

Examples

# \donttest{
library(omopgenerics)
library(dplyr, warn.conflicts = FALSE)

cdm <- cdmFromTables(
  tables = list(
    "person" = dplyr::tibble(
      person_id = c(1, 2, 3), gender_concept_id = 0, year_of_birth = 1990,
      race_concept_id = 0, ethnicity_concept_id = 0
    ),
    "observation_period" = dplyr::tibble(
      observation_period_id = 1:3, person_id = 1:3,
      observation_period_start_date = as.Date("2000-01-01"),
      observation_period_end_date = as.Date("2023-12-31"),
      period_type_concept_id = 0
    )
  ),
  cdmName = "mock"
)
#> Warning: ! 5 column in person do not match expected column type:
#>  `person_id` is numeric but expected integer
#>  `gender_concept_id` is numeric but expected integer
#>  `year_of_birth` is numeric but expected integer
#>  `race_concept_id` is numeric but expected integer
#>  `ethnicity_concept_id` is numeric but expected integer
#> Warning: ! 1 column in observation_period do not match expected column type:
#>  `period_type_concept_id` is numeric but expected integer

collect(cdm)
#> Warning: ! 5 column in person do not match expected column type:
#>  `person_id` is numeric but expected integer
#>  `gender_concept_id` is numeric but expected integer
#>  `year_of_birth` is numeric but expected integer
#>  `race_concept_id` is numeric but expected integer
#>  `ethnicity_concept_id` is numeric but expected integer
#> Warning: ! 1 column in observation_period do not match expected column type:
#>  `period_type_concept_id` is numeric but expected integer
#> 
#> ── # OMOP CDM reference (local) of mock ────────────────────────────────────────
#>omop tables: person, observation_period
#>cohort tables: -
#>achilles tables: -
#>other tables: -
# }