Get the domains associated with a codelist

Get the domains associated with a codelist

Usage

associatedDomains(x, cdm, standardConcept = "Standard")

Arguments

x

A codelist.

cdm

A cdm reference to an OMOP CDM dataset. If data is held within a database, the vocabulary tables should be in the same schema as the clinical tables (person, observation period, and so on).

standardConcept

Character vector with one or more of "Standard", "Classification", and "Non-standard". These correspond to the flags used for the standard_concept field in the concept table of the cdm.

Value

A vector with the domains of the cdm.

Examples

# \donttest{
library(CodelistGenerator)
library(omock)

# Create CDM object
cdm <- mockCdmReference()

# Get all domains available in a codelist
codelist <- newCodelist(list("codes1" = c(194152L, 1830279L, 40558872L),
                             "codes2" = c(44022939L)))
associatedDomains(x = codelist, cdm = cdm,
                 standardConcept = c("Non-standard", "Standard"))
#> $codes1
#> [1] "Condition" "Drug"      "Procedure"
#> 
#> $codes2
#> [1] "Drug"
#> 
# }