
Show mappings from non-standard vocabularies to standard
getMappings.Rd
Show mappings from non-standard vocabularies to standard
Usage
getMappings(
candidateCodelist,
cdm = NULL,
nonStandardVocabularies = c("ATC", "ICD10CM", "ICD10PCS", "ICD9CM", "ICD9Proc",
"LOINC", "OPCS4", "Read", "RxNorm", "RxNorm Extension", "SNOMED")
)
Examples
# \donttest{
cdm <- CodelistGenerator::mockVocabRef()
#> Warning: There are observation period end dates after the current date: 2025-03-27
#> ℹ The latest max observation period end date found is 2025-12-31
codes <- CodelistGenerator::getCandidateCodes(
cdm = cdm,
keywords = "osteoarthritis"
)
#> Limiting to domains of interest
#> Getting concepts to include
#> Adding descendants
#> Search completed. Finishing up.
#> ✔ 2 candidate concepts identified
#> Time taken: 0 minutes and 0 seconds
CodelistGenerator::getMappings(
cdm = cdm,
candidateCodelist = codes,
nonStandardVocabularies = "READ"
)
#> # A tibble: 1 × 7
#> standard_concept_id standard_concept_name standard_vocabulary_id
#> <int> <chr> <chr>
#> 1 4 Osteoarthritis of knee SNOMED
#> # ℹ 4 more variables: non_standard_concept_id <int>,
#> # non_standard_concept_name <chr>, non_standard_concept_code <chr>,
#> # non_standard_vocabulary_id <chr>
# }