Run benchmark for ExecuteSingleIngredient

Run benchmark for ExecuteSingleIngredient

Usage

runBenchmarkExecuteSingleIngredient(
  cdm,
  ingredients = c(1125315),
  subsetToConceptId = NULL,
  checks = c("missing", "exposureDuration", "quantity"),
  minCellCount = 5,
  sampleSize = 10000,
  tablePrefix = NULL,
  earliestStartDate = "2010-01-01",
  verbose = FALSE,
  byConcept = FALSE
)

Arguments

cdm

CDMConnector reference object

ingredients

vector of ingredients, by default: acetaminophen

subsetToConceptId

vector of concept IDs of the ingredients to filter. If a concept ID is positive it will be included, a negative one will be excluded. If NULL (default), all concept IDs for an ingredient will be considered.

checks

the checks to be executed, by default the missing values, the exposure duration and the quantity. Possible options are "missing", "exposureDuration", "type", "route", "sourceConcept", "daysSupply", "verbatimEndDate", "dose", "sig", "quantity" and "diagnosticsSummary"

minCellCount

minimum number of events to report- results lower than this will be obscured. If 0 all results will be reported.

sampleSize

the number of samples, default 10.000

tablePrefix

The stem for the permanent tables that will be created when running the diagnostics. Permanent tables will be created using this prefix, and any existing tables that start with this will be at risk of being dropped or overwritten. If NULL, temporary tables will be

earliestStartDate

the earliest date from which a record can be included

verbose

verbose, default FALSE

byConcept

boolean argument whether to return results by Concept or overall only

Value

a tibble with the time taken and memory usage for different analysis per ingredient

Examples

if (FALSE) { # \dontrun{
cdm <- mockDrugExposure()

benchmarkResults <- runBenchmarkExecuteSingleIngredient(cdm)
} # }