Function reference
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checkDaysSupply() - Check if Days_supply is the same as datediff(drug_exp_start_date,drug_exp_end_date)
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checkDbType() - Check the database type.
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checkDrugDose() - Get a summary of the daily drug dose
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checkDrugSig() - Check the drug sig field; this is the verbatim instruction for the drug as written by the provider.
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checkIsIngredient() - Check is an ingredient
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checkLogical() - Check if given object is a boolean.
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checkSampleMinCellCount() - Check that the sample is bigger than the mincellcount
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checkTableExists() - Check if given table exists in cdm.
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checkVerbatimEndDate() - Check the verbatim_end_date field
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computeDBQuery() - Store the given input in a remote database table. It will be stored either in a permanent table or a temporary table depending on tablePrefix.
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createHistogram() - create a histogram for one of days_supply, duration, quantity
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dataFrame2Hist() - Load an object of class histogram from a data.frame
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executeChecks() - Execute given checks on Drug Exposure.
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executeChecksSingleIngredient() - Execute given checks on Drug Exposure for a single ingredient.
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getDrugMissings() - Check missings in drug exposure records
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getDrugRecords() - Drug exposure records for ingredients of interest
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getDrugRoutes() - Get drug exposure route types
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getDrugSourceConcepts() - Check drug exposure source types
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getDrugStrength() - Drug strength records for ingredients of interest
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getDrugTypes() - Get drug exposure record types
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getDuration() - Compute the difference in days between 2 variables in a database table.
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getEunomiaCdm() - Get an eunomia CDM reference for given ingredient
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hist2DataFrame() - Save an object of class histogram to a data.frame
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ingredientDescendantsInDb() - Get the descendants for the given ingredients
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mockDrugExposure() - Mock Drug exposure tables for ingredients of interest
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obscureCounts() - Obscure the small number of counts
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printDurationAndMessage() - Print duration from start to now and print it as well as new status message
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summariseChecks() - Create a summary about the diagnostics results
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summariseDrugExposureDuration() - Summarise drug exposure record durations
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summariseQuantity() - Summarise the quantity column of the drug_exposure table
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writeResultToDisk() - Write diagnostics results to a zip file on disk in given output folder.