Package index
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checkDaysSupply()
- Check if Days_supply is the same as datediff(drug_exp_start_date,drug_exp_end_date)
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checkDbType()
- Check the database type.
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checkDrugDose()
- Get a summary of the daily drug dose
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checkDrugSig()
- Check the drug sig field; this is the verbatim instruction for the drug as written by the provider.
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checkIngredientInTable()
- Check ingredient is present in given table
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checkIsIngredient()
- Check is an ingredient
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checkLogical()
- Check if given object is a boolean.
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checkSampleMinCellCount()
- Check that the sample is bigger than the mincellcount
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checkTableExists()
- Check if given table exists in cdm.
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checkVerbatimEndDate()
- Check the verbatim_end_date field
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computeDBQuery()
- Store the given input in a remote database table. It will be stored either in a permanent table or a temporary table depending on tablePrefix.
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executeChecks()
- Execute given checks on Drug Exposure.
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executeChecksSingleIngredient()
- Execute given checks on Drug Exposure for a single ingredient.
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getDrugMissings()
- Check missings in drug exposure records
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getDrugRecords()
- Drug exposure records for ingredients of interest
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getDrugRoutes()
- Get drug exposure route types
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getDrugSourceConcepts()
- Check drug exposure source types
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getDrugStrength()
- Drug strength records for ingredients of interest
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getDrugTypes()
- Get drug exposure record types
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getDuration()
- Compute the difference in days between 2 variables in a database table.
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ingredientDescendantsInDb()
- Get the descendants for the given ingredients
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mockDrugExposure()
- Mock Drug exposure tables for ingredients of interest
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obscureCounts()
- Obscure the small number of counts
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printDurationAndMessage()
- Print duration from start to now and print it as well as new status message
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runBenchmarkExecuteSingleIngredient()
- Run benchmark for ExecuteSingleIngredient
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summariseChecks()
- Create a summary about the diagnostics results
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summariseDrugExposureDuration()
- Summarise drug exposure record durations
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summariseQuantity()
- Summarise the quantity column of the drug_exposure table
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viewResults()
- View the results in the Shiny app
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writeFile()
- Write a result to a file on disk.
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writeIngredientResultToDisk()
- Write (ingredient) diagnostics results on disk in given output folder.
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writeResultToDisk()
- Write diagnostics results to a zip file on disk in given output folder.
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writeZipToDisk()
- Write (ingredient) diagnostics results on disk in given output folder.