Package index • DrugExposureDiagnostics

All functions

ShinyApp: DrugExposureDiagnostics ShinyApp

ShinyModule: Module Decorator Class

checkDaysSupply(): Check if Days_supply is the same as datediff(drug_exp_start_date,drug_exp_end_date)

checkDbType(): Check the database type.

checkDrugDose(): Get a summary of the daily drug dose

checkDrugSig(): Check the drug sig field; this is the verbatim instruction for the drug as written by the provider.

checkIngredientInTable(): Check ingredient is present in given table

checkIsIngredient(): Check is an ingredient

checkLogical(): Check if given object is a boolean.

checkSampleMinCellCount(): Check that the sample is bigger than the mincellcount

checkTableExists(): Check if given table exists in cdm.

checkVerbatimEndDate(): Check the verbatim_end_date field

computeDBQuery(): Store the given input in a remote database table. It will be stored either in a permanent table or a temporary table depending on tablePrefix.

dataPlotPanel: dataPlotPanel

executeChecks(): Execute given checks on Drug Exposure.

executeChecksSingleIngredient(): Execute given checks on Drug Exposure for a single ingredient.

getAllCheckOptions(): Get all options that can be passed to the "checks" parameter

getDrugMissings(): Check missings in drug exposure records

getDrugRecords(): Drug exposure records for ingredients of interest

getDrugRoutes(): Get drug exposure route types

getDrugSourceConcepts(): Check drug exposure source types

getDrugTypes(): Get drug exposure record types

getDuration(): Compute the difference in days between 2 variables in a database table.

ingredientDescendantsInDb(): Get the descendants for the given ingredients

metaDataPanel: metaDataPanel

mockDrugExposure(): Mock Drug exposure tables for ingredients of interest

obscureCounts(): Obscure the small number of counts

printDurationAndMessage(): Print duration from start to now and print it as well as new status message

runBenchmarkExecuteSingleIngredient(): Run benchmark for ExecuteSingleIngredient

summariseChecks(): Create a summary about the diagnostics results

summariseDrugExposureDuration(): Summarise drug exposure record durations

summariseQuantity(): Summarise the quantity column of the drug_exposure table

summariseTimeBetween(): Check time in between drug records per person and report the summary

validateChecks(): Validate the "checks" parameter

viewResults(): View the results in the Shiny app

writeFile(): Write a result to a file on disk.

writeIngredientResultToDisk(): Write (ingredient) diagnostics results on disk in given output folder.

writeResultToDisk(): Write diagnostics results to a zip file on disk in given output folder.

writeZipToDisk(): Write (ingredient) diagnostics results on disk in given output folder.