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Changelog

Source: NEWS.md

CDMConnector 1.7.0

  • Add support for Big Query using bigrquery DBI package (pending PRs on omopgenerics and bigrquery) @IoannaNika
  • Add support for the DatabaseConnector postgresql JDBC driver @ablack3
  • By default automatically detect CDM version @catalamarti
  • Deprecate snake case functions @IoannaNika
  • Deprecate cohort manipulation functions @ablack3
  • Deprecate validation functions @ablack3

CDMConnector 1.6.1

CRAN release: 2024-11-29

  • use BIGINT for subject_id column of cohort tables

CDMConnector 1.6.0

CRAN release: 2024-11-13

  • fix bug in copyCdmTo where attribute tables were not being copied #231 @catalamarti
  • check that overwrite argument works in compute when using temp tables #222 @ablack3
  • added synpuf1k with Achilles tables to example datasets #230 @ablack3
  • add requireEunomia function #481 @catalamarti

CDMConnector 1.5.0

CRAN release: 2024-07-16

  • Get all tests passing on Databricks/Spark using odbc driver
  • Emulate temporary tables on Databricks/Spark when compute is called with temporary = TRUE
  • soft deprecate asDate in favor of as.Date
  • soft deprecate assertWriteSchema since cdm object are now required to always have a write schema
  • remove support for Capr cohort objects in generate_cohort_set to pass CRAN checks

CDMConnector 1.4.0

CRAN release: 2024-05-03

  • fix issue on cran server
  • new omopgenerics methods

CDMConnector 1.3.1

CRAN release: 2024-04-02

  • Bug fix for collapse cohort
  • dbplyr 2.5.0 fixes

CDMConnector 1.3.0

CRAN release: 2024-02-05

  • Incorporate omopgenerics

CDMConnector 1.2.1

CRAN release: 2024-01-18

  • Fix failing CRAN tests

CDMConnector 1.2.0

CRAN release: 2023-10-31

  • Compatibility with dbplyr v2.4.0

CDMConnector 1.1.4

CRAN release: 2023-10-20

  • Fix recursive edge cases with cdm reference issue.

CDMConnector 1.1.3

CRAN release: 2023-10-14

CDMConnector 1.1.2

CRAN release: 2023-08-22

  • fix failing test on CRAN

CDMConnector 1.1.1

CRAN release: 2023-08-22

  • add some bigquery support

August 22, 2023

CDMConnector 1.1.0

CRAN release: 2023-08-17

  • add copy_cdm_to, copyCdmTo
  • add generate_concept_cohort_set, generateConceptCohortSet
  • add more example CDM datasets
  • add record_cohort_attrition, recordCohortAttrition
  • improve database test coverage
  • update vignettes

Released Aug 17, 2023

CDMConnector 1.0.0

CRAN release: 2023-06-12

  • remove write_prefix in cdm_from_con in favor of using the write_schema argument for prefixing
  • remove cdm_tables argument from cdm_from_con in favor of cdm_select_tbl selection function
  • add attributes to the cdm object to communicate downstream temp table preferences

Released June 7, 2023

CDMConnector 0.6.0

CRAN release: 2023-05-05

  • generate Capr cohorts with generateCohortSet
  • add datepart function for extracting year, month, day parts of dates in dplyr
  • fix datediff logic for years so it now returns number of complete years between two date
  • add “write_prefix” attribute to cdm objects to support a namespace within the write_schema

Released May 5, 2023

CDMConnector 0.5.1

CRAN release: 2023-03-22

  • Add both camelCase and snake_case versions of all functions (@Tsemharb)
  • Add cdm object attributes to cdm_snapshot output
  • use number_records and number_subjects in cohort counts table
  • Minor bug fixes

Released on March 20, 2023

CDMConnector 0.5.0

CRAN release: 2023-03-09

  • Define generatedCohortSet class
  • Add summarize_quantile for cross database quantile queries
  • Add GeneratedCohortSet object, constructor, and attribute accessor functions
  • Add vignette on cohort generation
  • Add cdmSubset, cdmSubsetCohort, cdmSample for subsetting a cdm
  • Add cdmFlatten for transforming a cdm into a single flat table of observations
  • Improve test coverage
  • Make Java dependency optional
  • cdm_schema is now required in cdm_from_con except for duckdb connections
  • Remove visit_detail from default cdm tables
  • Deprecate computePermanent
  • Improve package website

Substantial contributions by @edward-burn, @catalamarti, @Tsemharb who are now package co-authors.

Released Mar 8, 2023

CDMConnector 0.4.1

CRAN release: 2023-01-24

  • Add computeQuery function for creating temp and persistent tables from dplyr queries
  • Download Eunomia from darwin-eu repository as zipped csv files
  • Add passing tests for Oracle and Spark
  • Add asDate wrapper that provides correct as.Date dbplyr translations
  • Incorporate code review suggestions from @mvankessel-EMC

Released Jan 21, 2023

CDMConnector 0.3.0

CRAN release: 2022-11-29

  • Add computePermanent and appendPermanent functions
  • Add readCohortSet
  • Add generateCohortSet
  • Extract Eunomia dataset so that it is downloaded separately

Released Nov 29, 2022

CDMConnector 0.2.0

  • Add support for OMOP v5.3 and v5.4
  • Add datediff and dateadd functions that can be used in dplyr::mutate()
  • Add assert_tables function for checking that a cdm object has required tables
  • Add camelCase versions of several functions

Released Nov 15, 2022

CDMConnector 0.1.0

CRAN release: 2022-09-29

  • Initial release Sept 11, 2022
  • Added a NEWS.md file to track changes to the package.