Subset a cdm object to a set of persons

cdmSubset takes a cdm object and a list of person IDs as input. It returns a new cdm that includes data only for persons matching the provided person IDs. Generated cohorts in the cdm will also be subset to the IDs provided.

Usage

cdmSubset(cdm, personId)

cdm_subset(cdm, person_id)

Arguments

cdm

A cdm_reference object

person_id, personId

A numeric vector of person IDs to include in the cdm

Value

A modified cdm_reference object where all clinical tables are lazy queries pointing to subset

Details

Examples

if (FALSE) { # \dontrun{
library(CDMConnector)
library(dplyr, warn.conflicts = FALSE)

con <- DBI::dbConnect(duckdb::duckdb(), eunomia_dir())

cdm <- cdm_from_con(con, cdm_schema = "main")

cdm2 <- cdmSubset(cdm, personId = c(2, 18, 42))

cdm2$person %>%
  select(1:3)
#> # Source:   SQL [3 x 3]
#> # Database: DuckDB 0.6.1
#>   person_id gender_concept_id year_of_birth
#>       <dbl>             <dbl>         <dbl>
#> 1         2              8532          1920
#> 2        18              8532          1965
#> 3        42              8532          1909

DBI::dbDisconnect(con, shutdown = TRUE)
} # }