Create a CDM reference object from a database connection
Usage
cdm_from_con(
con,
cdm_schema = NULL,
write_schema = NULL,
cohort_tables = NULL,
cdm_version = "5.3",
cdm_name = NULL,
achilles_schema = NULL
)
cdmFromCon(
con,
cdmSchema = NULL,
writeSchema = NULL,
achillesSchema = NULL,
cohortTables = NULL,
cdmVersion = "5.3",
cdmName = NULL
)
Arguments
- con
A DBI database connection to a database where an OMOP CDM v5.4 or v5.3 instance is located.
- cdm_schema, cdmSchema
The schema where the OMOP CDM tables are located. Defaults to NULL.
- write_schema, writeSchema
An optional schema in the CDM database that the user has write access to.
- cohort_tables, cohortTables
A character vector listing the cohort table names to be included in the CDM object.
- cdm_version, cdmVersion
The version of the OMOP CDM: "5.3" (default), "5.4", "auto". "auto" attempts to automatically determine the cdm version using heuristics. Cohort tables must be in the write_schema.
- cdm_name, cdmName
The name of the CDM. If NULL (default) the cdm_source_name . field in the CDM_SOURCE table will be used.
- achilles_schema, achillesSchema
An optional schema in the CDM database that contains achilles tables.