Create a cdm object from local tables
Usage
cdm_from_tables(tables, cdm_name, cohort_tables = list(), cdm_version = NULL)
Arguments
- tables
List of tables to be part of the cdm object.
- cdm_name
Name of the cdm object.
- cohort_tables
List of tables that contains cohort, cohort_set and cohort_attrition can be provided as attributes.
- cdm_version
Version of the cdm_reference
Examples
# \donttest{
library(omopgenerics)
#> Warning: package ‘omopgenerics’ was built under R version 4.3.3
#>
#> Attaching package: ‘omopgenerics’
#> The following objects are masked from ‘package:CDMConnector’:
#>
#> cdmName, recordCohortAttrition, uniqueTableName
#> The following object is masked from ‘package:stats’:
#>
#> filter
library(dplyr, warn.conflicts = FALSE)
person <- tibble(
person_id = 1, gender_concept_id = 0, year_of_birth = 1990,
race_concept_id = 0, ethnicity_concept_id = 0
)
observation_period <- tibble(
observation_period_id = 1, person_id = 1,
observation_period_start_date = as.Date("2000-01-01"),
observation_period_end_date = as.Date("2025-12-31"),
period_type_concept_id = 0
)
cdm <- cdm_from_tables(
tables = list("person" = person, "observation_period" = observation_period),
cdm_name = "test"
)
# }