Check coverage of daily dose computation in a sample of the cdm for selected concept sets and ingredient

Usage

summariseDoseCoverage(
  cdm,
  ingredientConceptId,
  estimates = c("count_missing", "percentage_missing", "mean", "sd", "q25", "median",
    "q75"),
  sampleSize = NULL
)

Arguments

cdm: A cdm_reference object.
ingredientConceptId: Ingredient OMOP concept that we are interested for the study.
estimates: Estimates to obtain.
sampleSize: Maximum number of records of an ingredient to estimate dose coverage. If an ingredient has more, a random sample equal to sampleSize will be considered. If NULL, all records will be used.

Value

The function returns information of the coverage of computeDailyDose.R for the selected ingredients and concept sets

Examples

# \donttest{
library(DrugUtilisation)

cdm <- mockDrugUtilisation()

summariseDoseCoverage(cdm, 1125315)
#> ℹ The following estimates will be computed:
#> • daily_dose: count_missing, percentage_missing, mean, sd, q25, median, q75
#> ! Table is collected to memory as not all requested estimates are supported on
#>   the database side
#> → Start summary of data, at 2024-12-19 13:45:23.435908
#> ✔ Summary finished, at 2024-12-19 13:45:23.699866
#> # A tibble: 48 × 13
#>    result_id cdm_name group_name      group_level   strata_name strata_level
#>        <int> <chr>    <chr>           <chr>         <chr>       <chr>       
#>  1         1 DUS MOCK ingredient_name acetaminophen overall     overall     
#>  2         1 DUS MOCK ingredient_name acetaminophen overall     overall     
#>  3         1 DUS MOCK ingredient_name acetaminophen overall     overall     
#>  4         1 DUS MOCK ingredient_name acetaminophen overall     overall     
#>  5         1 DUS MOCK ingredient_name acetaminophen overall     overall     
#>  6         1 DUS MOCK ingredient_name acetaminophen overall     overall     
#>  7         1 DUS MOCK ingredient_name acetaminophen overall     overall     
#>  8         1 DUS MOCK ingredient_name acetaminophen overall     overall     
#>  9         1 DUS MOCK ingredient_name acetaminophen unit        milligram   
#> 10         1 DUS MOCK ingredient_name acetaminophen unit        milligram   
#> # ℹ 38 more rows
#> # ℹ 7 more variables: variable_name <chr>, variable_level <chr>,
#> #   estimate_name <chr>, estimate_type <chr>, estimate_value <chr>,
#> #   additional_name <chr>, additional_level <chr>
# }