Package index • IncidencePrevalence

Build denominator cohorts

generateDenominatorCohortSet(): Identify a set of denominator populations

generateTargetDenominatorCohortSet(): Identify a set of denominator populations using a target cohort

Estimate incidence rates

estimateIncidence(): Collect population incidence estimates

Estimate point and period prevalence

estimatePeriodPrevalence(): Estimate period prevalence

estimatePointPrevalence(): Estimate point prevalence

Tidy results

asIncidenceResult(): A tidy implementation of the summarised_result object for incidence results.

asPrevalenceResult(): A tidy implementation of the summarised_result object for prevalence results.

Plot results

availableIncidenceGrouping(): Variables that can be used for faceting and colouring incidence plots

availablePrevalenceGrouping(): Variables that can be used for faceting and colouring prevalence plots

plotIncidence(): Plot incidence results

plotIncidencePopulation(): Bar plot of denominator counts, outcome counts, and person-time from incidence results

plotPrevalence(): Plot prevalence results

plotPrevalencePopulation(): Bar plot of denominator and outcome counts from prevalence results

Tabulate results

optionsTableIncidence(): Additional arguments for the functions tableIncidence.

optionsTablePrevalence(): Additional arguments for the functions tablePrevalence.

tableIncidence(): Table of incidence results

tableIncidenceAttrition(): Table of incidence attrition results

tablePrevalence(): Table of prevalence results

tablePrevalenceAttrition(): Table of prevalence attrition results

Mock data

mockIncidencePrevalence(): Generate example subset of the OMOP CDM for estimating incidence and prevalence

Benchmark package

IncidencePrevalenceBenchmarkResults: Benchmarking results

benchmarkIncidencePrevalence(): Run benchmark of incidence and prevalence analyses